Downloads:
8,906
Downloads of v 3.10.2:
187
Last Update:
20 Aug 2024
Package Maintainer(s):
Software Author(s):
- Cytoscape Consortium
Tags:
cytoscape graph visualization analysis- Software Specific:
- Software Site
- Software License
- Software Docs
- Software Issues
- Package Specific:
- Package Source
- Package outdated?
- Package broken?
- Contact Maintainers
- Contact Site Admins
- Software Vendor?
- Report Abuse
- Download
Cytoscape
- 1
- 2
- 3
3.10.2 | Updated: 20 Aug 2024
- Software Specific:
- Software Site
- Software License
- Software Docs
- Software Issues
- Package Specific:
- Package Source
- Package outdated?
- Package broken?
- Contact Maintainers
- Contact Site Admins
- Software Vendor?
- Report Abuse
- Download
Downloads:
8,906
Downloads of v 3.10.2:
187
Software Author(s):
- Cytoscape Consortium
Cytoscape 3.10.2
Legal Disclaimer: Neither this package nor Chocolatey Software, Inc. are affiliated with or endorsed by Cytoscape Consortium. The inclusion of Cytoscape Consortium trademark(s), if any, upon this webpage is solely to identify Cytoscape Consortium goods or services and not for commercial purposes.
- 1
- 2
- 3
All Checks are Passing
3 Passing Tests
Deployment Method: Individual Install, Upgrade, & Uninstall
To install Cytoscape, run the following command from the command line or from PowerShell:
To upgrade Cytoscape, run the following command from the command line or from PowerShell:
To uninstall Cytoscape, run the following command from the command line or from PowerShell:
Deployment Method:
This applies to both open source and commercial editions of Chocolatey.
1. Enter Your Internal Repository Url
(this should look similar to https://community.chocolatey.org/api/v2/)
2. Setup Your Environment
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment
Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
-
Download the package:
Download - Follow manual internalization instructions
-
-
Package Internalizer (C4B)
-
Run: (additional options)
choco download cytoscape --internalize --source=https://community.chocolatey.org/api/v2/
-
For package and dependencies run:
choco push --source="'INTERNAL REPO URL'"
- Automate package internalization
-
Run: (additional options)
3. Copy Your Script
choco upgrade cytoscape -y --source="'INTERNAL REPO URL'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade cytoscape -y --source="'INTERNAL REPO URL'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Install cytoscape
win_chocolatey:
name: cytoscape
version: '3.10.2'
source: INTERNAL REPO URL
state: present
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
chocolatey_package 'cytoscape' do
action :install
source 'INTERNAL REPO URL'
version '3.10.2'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
cChocoPackageInstaller cytoscape
{
Name = "cytoscape"
Version = "3.10.2"
Source = "INTERNAL REPO URL"
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'cytoscape':
ensure => '3.10.2',
provider => 'chocolatey',
source => 'INTERNAL REPO URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
4. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...
This package was approved by moderator gep13 on 26 Aug 2024.
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
$ErrorActionPreference = 'Stop';
$packageName = 'cytoscape'
$softwareName = 'Cytoscape*'
$installerType = 'EXE'
$silentArgs = '-q'
$validExitCodes = @(0)
[array]$key = Get-UninstallRegistryKey -SoftwareName $softwareName
if ($key.Count -eq 1) {
$key | % {
$file = "$($_.UninstallString)"
Uninstall-ChocolateyPackage -PackageName $packageName `
-FileType $installerType `
-SilentArgs "$silentArgs" `
-ValidExitCodes $validExitCodes `
-File "$file"
}
} elseif ($key.Count -eq 0) {
Write-Warning "$packageName has already been uninstalled by other means."
} elseif ($key.Count -gt 1) {
Write-Warning "$key.Count matches found!"
Write-Warning "To prevent accidental data loss, no programs will be uninstalled."
Write-Warning "Please alert package maintainer the following keys were matched:"
$key | ForEach-Object {Write-Warning "- $_.DisplayName"}
}
Log in or click on link to see number of positives.
- cytoscape.3.10.2.nupkg (a311fabdd454) - ## / 66
- Cytoscape_3_10_2_windows_64bit.exe (8e2b92e8f01c) - ## / 64
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Add to Builder | Version | Downloads | Last Updated | Status |
---|---|---|---|---|
Cytoscape 3.10.2 | 187 | Tuesday, August 20, 2024 | Approved | |
cytoscape 3.9.1 | 7000 | Wednesday, January 25, 2023 | Exempted | |
cytoscape (Install) 3.7.1 | 967 | Sunday, February 24, 2019 | Approved | |
cytoscape (Install) 3.4.0 | 724 | Monday, September 19, 2016 | Approved |
-
- zulu17 (≥ 17.28.13.0)
Ground Rules:
- This discussion is only about Cytoscape and the Cytoscape package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
- The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
- Tell us what you love about the package or Cytoscape, or tell us what needs improvement.
- Share your experiences with the package, or extra configuration or gotchas that you've found.
- If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.