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Downloads:

1,523

Downloads of v 1.1.0.20161129:

538

Last Update:

29 Nov 2016

Package Maintainer(s):

teknowledgist

Software Author(s):

Lablicate

Tags:

openchrom chromatography chemistry spectometry admin

OpenChrom Community Edition

This is not the latest version of OpenChrom Community Edition available.

1.1.0.20161129 | Updated: 29 Nov 2016

Downloads:

1,523

Downloads of v 1.1.0.20161129:

538

Maintainer(s):

teknowledgist

Software Author(s):

Lablicate

Tags:

openchrom chromatography chemistry spectometry admin

1

2

3

OpenChrom Community Edition 1.1.0.20161129

This is not the latest version of OpenChrom Community Edition available.

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Details

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This package was submitted (and approved) prior to automated virus scanning integration into the package moderation processs.

We recommend clicking the "Details" link to make your own decision on installing this package.

Details

Individual
Organization

To install OpenChrom Community Edition, run the following command from the command line or from PowerShell:

To upgrade OpenChrom Community Edition, run the following command from the command line or from PowerShell:

To uninstall OpenChrom Community Edition, run the following command from the command line or from PowerShell:

NOTE: This applies to both open source and commercial editions of Chocolatey.

1. Ensure you are set for organizational deployment

Please see the organizational deployment guide

2. Get the package into your environment

Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)

Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download

Option 2: Internalized Package (Reliable, Scalable)

Open Source
- Download the Package Download
- Follow manual internalization instructions
Package Internalizer (C4B)
- Run choco download openchrom --internalize --version=1.1.0.20161129 --source=https://community.chocolatey.org/api/v2 (additional options)
- Run choco push --source="'http://internal/odata/repo'" for package and dependencies
- Automate package internalization

3. Enter your internal repository url

(this should look similar to https://community.chocolatey.org/api/v2)

4. Choose your deployment method:


choco upgrade openchrom -y --source="'STEP 3 URL'" [other options]

See options you can pass to upgrade.

See best practices for scripting.

Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.

If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:


choco upgrade openchrom -y --source="'STEP 3 URL'"
$exitCode = $LASTEXITCODE

Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
  Exit 0
}

Exit $exitCode


- name: Ensure openchrom installed
  win_chocolatey:
    name: openchrom
    state: present
    version: 1.1.0.20161129
    source: STEP 3 URL

See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.


chocolatey_package 'openchrom' do
  action    :install
  version  '1.1.0.20161129'
  source   'STEP 3 URL'
end

See docs at https://docs.chef.io/resource_chocolatey_package.html.


Chocolatey::Ensure-Package
(
    Name: openchrom,
    Version: 1.1.0.20161129,
    Source: STEP 3 URL
);

Requires Otter Chocolatey Extension. See docs at https://inedo.com/den/otter/chocolatey.


cChocoPackageInstaller openchrom
{
   Name     = 'openchrom'
   Ensure   = 'Present'
   Version  = '1.1.0.20161129'
   Source   = 'STEP 3 URL'
}

Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.


package { 'openchrom':
  provider => 'chocolatey',
  ensure   => '1.1.0.20161129',
  source   => 'STEP 3 URL',
}

Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.


salt '*' chocolatey.install openchrom version="1.1.0.20161129" source="STEP 3 URL"

See docs at https://docs.saltstack.com/en/latest/ref/modules/all/salt.modules.chocolatey.html.

5. If applicable - Chocolatey configuration/installation

See infrastructure management matrix for Chocolatey configuration elements and examples.

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This package was approved by moderator flcdrg on 30 Nov 2016.

Description

OpenChrom® Community Edition is a free, extendable and easy-to-use software tool for chromatographic and mass spectrometric data analysis based on the Eclipse Rich Client Platform (RCP). Its focus is on handling mass spectrometry data files natively. Hence, mass spectrometric data generated, for example, by GC/MS, LC/MS, HPLC-MS, ICP-MS or MALDI-MS may be imported directly, without prior conversion, for subsequent visualization and evaluation. Aside from the support of various vendor data formats, data may also be imported in common formats such as NetCDF, csv or mzXML. All data format converters are provided as separate plug-ins which are not open source but free to use. Moreover, OpenChrom® offers a nicely adaptable graphical user interface.

OpenChrom® is tailored for data analysis purposes including processing, visualization and reporting. The implemented batch-processing features allow high-throughput evaluation. A continuously growing portfolio of processing and analysis procedures is provided. Extensions are welcome, as OpenChrom® is open source and uses a flexible approach, which allows others to implement their own methods, algorithms, filters, detectors or integrators.

Features

Vendor formats data import
Open formats data import
Export formats
Processing filters
Classifier
Background detection
Peak detection
Peak integration
Quantitation
Batch processing
Reporting
Office integration editor
Extensible with plugins

Files

tools\chocolateyInstall.ps1

$InstallArgs = @{
   packageName = 'openchrom'
   installerType = 'exe'
   url = 'https://sourceforge.net/projects/openchrom/files/REL-1.1.0/openchrom_1.1.0_x86_win-setup.exe/download'
   url64 = 'https://sourceforge.net/projects/openchrom/files/REL-1.1.0/openchrom_1.1.0_x86_64_win-setup.exe/download'
   checksum = '319E449D54BB568FDB68CD439326DE8332A7F95CFE7C4F8BFC97ED571213AB2B'
   checksum64 = '09CB8A71AC45CD1CECF93450F49CB880B994140F5061C8DC5398EE4B86610BC9'
   checksumType = 'sha256'
   silentArgs = '/S'
   validExitCodes = @(0)
}

Install-ChocolateyPackage @InstallArgs

tools\chocolateyUninstall.ps1

$RegistryLocation = 'HKLM:\Software\Microsoft\Windows\CurrentVersion\Uninstall'

$unexe = Get-ItemProperty "$RegistryLocation\*" | 
                     Where-Object { $_.displayname -eq 'OpenChrom'} |
                     Select-Object -ExpandProperty UninstallString

$UninstallArgs = @{
   packageName = 'openchrom'
   fileType = 'exe'
   file = $unexe
   silentArgs = '/S'
   validExitCodes = @(0)
}

Uninstall-ChocolateyPackage @UninstallArgs

Virus Scan Results

openchrom_1.1.0_x86_win-setup.exe (319e449d54bb) - ## / 54
openchrom.1.1.0.20161129.nupkg (1a65c2f16da3) - ## / 56

In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).

Chocolatey Pro provides runtime protection from possible malware.

Version History

Version	Downloads	Last Updated	Status
OpenChrom Community Edition 1.3.0	679	Monday, October 22, 2018	Approved
OpenChrom Community Edition 1.1.0.20161129	538	Tuesday, November 29, 2016	Approved
OpenChrom Community Edition 1.1.0	306	Monday, August 8, 2016	Approved

Release Notes

https://spectrometrylab.wordpress.com/2016/08/01/release-openchrom-1-1-0-diels/

Dependencies

This package has no dependencies.

Discussion for the OpenChrom Community Edition Package

Ground Rules:

This discussion is only about OpenChrom Community Edition and the OpenChrom Community Edition package. If you have feedback for Chocolatey, please contact the Google Group.
This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
Tell us what you love about the package or OpenChrom Community Edition, or tell us what needs improvement.
Share your experiences with the package, or extra configuration or gotchas that you've found.
If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.

1,523

538

29 Nov 2016

OpenChrom Community Edition

1 2 3 OpenChrom Community Edition 1.1.0.20161129

Some Checks Have Failed or Are Not Yet Complete

1. Ensure you are set for organizational deployment

3. Enter your internal repository url

4. Choose your deployment method:

5. If applicable - Chocolatey configuration/installation

Features

Ground Rules:

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OpenChrom Community Edition 1.1.0.20161129