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Announcing Chocolatey Central Management 0.10.0

Livestream from
Thursday, 06 October 2022

We recently released our largest update to Chocolatey Central Management so far. Join Gary and Steph to find out more about Chocolatey Central Management and the new features and fixes we've added to this release.

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Chocolatey and Intune Overview

Webinar Replay from
Wednesday, 30 March 2022

At Chocolatey Software we strive for simple, and teaching others. Let us teach you just how simple it could be to keep your 3rd party applications updated across your devices, all with Intune!

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Chocolatey For Business. In Azure. In One Click.

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Thursday, 9 June 2022

Join James and Josh to show you how you can get the Chocolatey For Business recommended infrastructure and workflow, created, in Azure, in around 20 minutes.

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The Future of Chocolatey CLI

Livestream from
Thursday, 04 August 2022

Join Paul and Gary to hear more about the plans for the Chocolatey CLI in the not so distant future. We'll talk about some cool new features, long term asks from Customers and Community and how you can get involved!

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Hacktoberfest Tuesdays 2022

Livestreams from
October 2022

For Hacktoberfest, Chocolatey ran a livestream every Tuesday! Re-watch Cory, James, Gary, and Rain as they share knowledge on how to contribute to open-source projects such as Chocolatey CLI.

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Chocolatey Product Spotlight: Chocolatey 1.2.0 and Chocolatey Licensed Extension 5.0.0

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Thursday, 03 November 2022

Join Paul and Gary for this months Chocolatey product livestream where we look at the latest release of Chocolatey 1.2.0, Chocolatey Licensed Extension 5.0.0 and shine a spotlight on the new hook scripts functionality. This opens up so many possibilities for Chocolatey CLI users!

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Chocolatey Coding Livestream

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Tuesday, 29 November 2022

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Introduction into Chocolatey with Veeam

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Tuesday, 13 December 2022

Join Gary, Paul, and Maurice as they introduce and demonstrate how to use Chocolatey! Questions will be answered live in an Ask Me Anything format.

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Downloads:

546

Downloads of v 2.6.1:

546

Last Update:

27 Jan 2020

Package Maintainer(s):

Software Author(s):

  • SerialBasics

Tags:

serialcloner molecular biology dna

Serial Cloner

  • 1
  • 2
  • 3

2.6.1 | Updated: 27 Jan 2020

Downloads:

546

Downloads of v 2.6.1:

546

Maintainer(s):

Software Author(s):

  • SerialBasics

Serial Cloner 2.6.1

  • 1
  • 2
  • 3

All Checks are Passing

3 Passing Tests


Validation Testing Passed


Verification Testing Passed

Details

Scan Testing Successful:

No detections found in any package files

Details
Learn More

Deployment Method: Individual Install, Upgrade, & Uninstall

To install Serial Cloner, run the following command from the command line or from PowerShell:

>

To upgrade Serial Cloner, run the following command from the command line or from PowerShell:

>

To uninstall Serial Cloner, run the following command from the command line or from PowerShell:

>

Deployment Method:

NOTE

This applies to both open source and commercial editions of Chocolatey.

1. Enter Your Internal Repository Url

(this should look similar to https://community.chocolatey.org/api/v2/)


2. Setup Your Environment

1. Ensure you are set for organizational deployment

Please see the organizational deployment guide

2. Get the package into your environment

  • Open Source or Commercial:
    • Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
    • You can also just download the package and push it to a repository Download

3. Copy Your Script

choco upgrade serialcloner -y --source="'INTERNAL REPO URL'" [other options]

See options you can pass to upgrade.

See best practices for scripting.

Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.

If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:


choco upgrade serialcloner -y --source="'INTERNAL REPO URL'" 
$exitCode = $LASTEXITCODE

Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
  Exit 0
}

Exit $exitCode

- name: Install serialcloner
  win_chocolatey:
    name: serialcloner
    version: '2.6.1'
    source: INTERNAL REPO URL
    state: present

See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.


chocolatey_package 'serialcloner' do
  action    :install
  source   'INTERNAL REPO URL'
  version  '2.6.1'
end

See docs at https://docs.chef.io/resource_chocolatey_package.html.


cChocoPackageInstaller serialcloner
{
    Name     = "serialcloner"
    Version  = "2.6.1"
    Source   = "INTERNAL REPO URL"
}

Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.


package { 'serialcloner':
  ensure   => '2.6.1',
  provider => 'chocolatey',
  source   => 'INTERNAL REPO URL',
}

Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.


4. If applicable - Chocolatey configuration/installation

See infrastructure management matrix for Chocolatey configuration elements and examples.

NOTE

Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...

Package Approved

This package was approved by moderator mwallner on 27 Jan 2020.

Description

Serial Cloner has been developed to provide a light yet powerful molecular biology software to Windows users.
Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format.
Serial Cloner also import files saved in the Vector NTI, MacVector, ApE, DNAstar, pDRAW32 and GenBank formats. Import from VectorNTI multi-file format is also supported.
Powerful graphical display tools and simple interfaces help the analysis and construction steps in a very intuitive way. Serial Cloner handles Annotations and Features both in the sequence and in the Graphic Map and can automatically scan for sequence Features.


tools\.skipAutoUninstall
 
tools\chocolateyinstall.ps1
$ErrorActionPreference = 'Stop'
$url = 'http://serialbasics.free.fr/Serial_Cloner-Download_files/SerialCloner2-6_Install.exe'

$packageArgs = @{
  packageName    = $env:ChocolateyPackageName
  fileType       = 'EXE'
  url            = $url
  softwareName   = 'Serial Cloner*'
  checksum       = 'DD12834C36B562F6AE3017B3BFD7F9631D5A662537F27FB2E5BF6E2D3DCA71F0'
  checksumType   = 'sha256'
  silentArgs     = '/VERYSILENT /SUPPRESSMSGBOXES /NORESTART /SP-'
  validExitCodes = @(0)
}

Install-ChocolateyPackage @packageArgs
tools\chocolateyuninstall.ps1
$ErrorActionPreference = 'Stop'
$packageArgs = @{
  packageName    = $env:ChocolateyPackageName
  softwareName   = 'Serial Cloner*'
  fileType       = 'EXE'
  silentArgs     = '/VERYSILENT /SUPPRESSMSGBOXES /NORESTART /SP-'
  validExitCodes = @(0)
}

[array]$key = Get-UninstallRegistryKey -SoftwareName $packageArgs['softwareName']

if ($key.Count -eq 1) {
  $key | ForEach-Object { 
    $packageArgs['file'] = "$($_.UninstallString)"
    
    if ($packageArgs['fileType'] -eq 'MSI') {
      $packageArgs['silentArgs'] = "$($_.PSChildName) $($packageArgs['silentArgs'])"
      $packageArgs['file'] = ''
    }
    Uninstall-ChocolateyPackage @packageArgs
  }
}
elseif ($key.Count -eq 0) {
  Write-Warning "$packageName has already been uninstalled by other means."
}
elseif ($key.Count -gt 1) {
  Write-Warning "$($key.Count) matches found!"
  Write-Warning "To prevent accidental data loss, no programs will be uninstalled."
  Write-Warning "Please alert package maintainer the following keys were matched:"
  $key | ForEach-Object { Write-Warning "- $($_.DisplayName)" }
}

Log in or click on link to see number of positives.

In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).

Chocolatey Pro provides runtime protection from possible malware.

Add to Builder Version Downloads Last Updated Status

Version 2.6.1

  • [ADDED] a preference to limit or not the width of Seq and Prot windows
  • [CORRECTED] Detection of overlapping Primers in PCR
  • [CORRECTED] Bug in "show info" toggle under Windows and Linux
  • [CORRECTED] Slow down under certain Windows install due to autosaving
  • [CORRECTED] Error in definition of PreScission site
  • [CORRECTED] Save/Save As problem is PCR window
  • [CORRECTED] Insertion point position when editing a protein sequence

This package has no dependencies.

Discussion for the Serial Cloner Package

Ground Rules:

  • This discussion is only about Serial Cloner and the Serial Cloner package. If you have feedback for Chocolatey, please contact the Google Group.
  • This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
  • The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
  • Tell us what you love about the package or Serial Cloner, or tell us what needs improvement.
  • Share your experiences with the package, or extra configuration or gotchas that you've found.
  • If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.
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