Downloads:
4,567
Downloads of v 1.18.0:
289
Last Update:
05 Aug 2024
Package Maintainer(s):
Software Author(s):
- UCSF Resource for Biocomputing
- Visualization
- and Informatics
Tags:
chimera chemistry molecular modeling python nonsilent adminUCSF Chimera
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1.18.0 | Updated: 05 Aug 2024
Downloads:
4,567
Downloads of v 1.18.0:
289
Maintainer(s):
Software Author(s):
- UCSF Resource for Biocomputing
- Visualization
- and Informatics
UCSF Chimera 1.18.0
Legal Disclaimer: Neither this package nor Chocolatey Software, Inc. are affiliated with or endorsed by UCSF Resource for Biocomputing, Visualization, and Informatics. The inclusion of UCSF Resource for Biocomputing, Visualization, and Informatics trademark(s), if any, upon this webpage is solely to identify UCSF Resource for Biocomputing, Visualization, and Informatics goods or services and not for commercial purposes.
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Some Checks Have Failed or Are Not Yet Complete
Not All Tests Have Passed
Deployment Method: Individual Install, Upgrade, & Uninstall
To install UCSF Chimera, run the following command from the command line or from PowerShell:
To upgrade UCSF Chimera, run the following command from the command line or from PowerShell:
To uninstall UCSF Chimera, run the following command from the command line or from PowerShell:
Deployment Method:
This applies to both open source and commercial editions of Chocolatey.
1. Enter Your Internal Repository Url
(this should look similar to https://community.chocolatey.org/api/v2/)
2. Setup Your Environment
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment
Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
-
Download the package:
Download - Follow manual internalization instructions
-
-
Package Internalizer (C4B)
-
Run: (additional options)
choco download chimera --internalize --source=https://community.chocolatey.org/api/v2/
-
For package and dependencies run:
choco push --source="'INTERNAL REPO URL'"
- Automate package internalization
-
Run: (additional options)
3. Copy Your Script
choco upgrade chimera -y --source="'INTERNAL REPO URL'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade chimera -y --source="'INTERNAL REPO URL'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Install chimera
win_chocolatey:
name: chimera
version: '1.18.0'
source: INTERNAL REPO URL
state: present
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
chocolatey_package 'chimera' do
action :install
source 'INTERNAL REPO URL'
version '1.18.0'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
cChocoPackageInstaller chimera
{
Name = "chimera"
Version = "1.18.0"
Source = "INTERNAL REPO URL"
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'chimera':
ensure => '1.18.0',
provider => 'chocolatey',
source => 'INTERNAL REPO URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
4. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
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This package was approved as a trusted package on 05 Nov 2024.
UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, nonprofit, and personal use. Chimera is developed by the Resource for Biocomputing, Visualization, and Informatics (RBVI), funded by the National Institutes of Health (NIGMS P41-GM103311).
Non-Commercial use ONLY
Use of the Chimera is restricted to non-commercial, personal, academic, non-profit, or government-sponsored research purposes. Commercial use of the Software requires a separately executed written license agreement.
Log in or click on link to see number of positives.
- chimera.1.18.0.nupkg (666164051266) - ## / 69
- chimera-1.18-win64.exe (ed12e67634f3) - ## / 55
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Add to Builder | Version | Downloads | Last Updated | Status |
---|---|---|---|---|
UCSF Chimera 1.18.0 | 289 | Monday, August 5, 2024 | Approved | |
UCSF Chimera 1.17.3 | 240 | Tuesday, August 8, 2023 | Approved | |
UCSF Chimera 1.17.1 | 170 | Sunday, April 30, 2023 | Approved | |
UCSF Chimera 1.17 | 83 | Monday, April 17, 2023 | Approved | |
UCSF Chimera 1.16 | 251 | Wednesday, December 29, 2021 | Approved | |
UCSF Chimera 1.15.0.20210211 | 817 | Thursday, February 11, 2021 | Approved | |
UCSF Chimera 1.15 | 211 | Sunday, January 3, 2021 | Approved | |
UCSF Chimera 1.14 | 1021 | Friday, December 6, 2019 | Approved | |
UCSF Chimera 1.13.1 | 741 | Friday, November 30, 2018 | Approved | |
UCSF Chimera 1.13 | 315 | Friday, August 3, 2018 | Approved | |
UCSF Chimera 1.12 | 429 | Thursday, February 22, 2018 | Approved |
© The Regents of the University of California, 1999-2017
This package has no dependencies.
Ground Rules:
- This discussion is only about UCSF Chimera and the UCSF Chimera package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
- The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
- Tell us what you love about the package or UCSF Chimera, or tell us what needs improvement.
- Share your experiences with the package, or extra configuration or gotchas that you've found.
- If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.