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Announcing Chocolatey Central Management 0.10.0

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Thursday, 06 October 2022

We recently released our largest update to Chocolatey Central Management so far. Join Gary and Steph to find out more about Chocolatey Central Management and the new features and fixes we've added to this release.

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Chocolatey and Intune Overview

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Wednesday, 30 March 2022

At Chocolatey Software we strive for simple, and teaching others. Let us teach you just how simple it could be to keep your 3rd party applications updated across your devices, all with Intune!

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Chocolatey For Business. In Azure. In One Click.

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Thursday, 9 June 2022

Join James and Josh to show you how you can get the Chocolatey For Business recommended infrastructure and workflow, created, in Azure, in around 20 minutes.

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The Future of Chocolatey CLI

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Thursday, 04 August 2022

Join Paul and Gary to hear more about the plans for the Chocolatey CLI in the not so distant future. We'll talk about some cool new features, long term asks from Customers and Community and how you can get involved!

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Hacktoberfest Tuesdays 2022

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For Hacktoberfest, Chocolatey ran a livestream every Tuesday! Re-watch Cory, James, Gary, and Rain as they share knowledge on how to contribute to open-source projects such as Chocolatey CLI.

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Chocolatey Product Spotlight: Chocolatey 1.2.0 and Chocolatey Licensed Extension 5.0.0

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Join Paul and Gary for this months Chocolatey product livestream where we look at the latest release of Chocolatey 1.2.0, Chocolatey Licensed Extension 5.0.0 and shine a spotlight on the new hook scripts functionality. This opens up so many possibilities for Chocolatey CLI users!

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Chocolatey Coding Livestream

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Tuesday, 29 November 2022

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Tuesday, 13 December 2022

Join Gary, Paul, and Maurice as they introduce and demonstrate how to use Chocolatey! Questions will be answered live in an Ask Me Anything format.

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Downloads:

3,281

Downloads of v 1.14:

947

Last Update:

06 Dec 2019

Package Maintainer(s):

Software Author(s):

  • UCSF Resource for Biocomputing
  • Visualization
  • and Informatics

Tags:

chimera chemistry molecular modeling python nonsilent admin

UCSF Chimera

This is not the latest version of UCSF Chimera available.

  • 1
  • 2
  • 3

1.14 | Updated: 06 Dec 2019

Downloads:

3,281

Downloads of v 1.14:

947

Maintainer(s):

Software Author(s):

  • UCSF Resource for Biocomputing
  • Visualization
  • and Informatics

UCSF Chimera 1.14

This is not the latest version of UCSF Chimera available.

  • 1
  • 2
  • 3

Some Checks Have Failed or Are Not Yet Complete

Not All Tests Have Passed


Validation Testing Passed


Verification Testing Failed

Details

Scan Testing Successful:

No detections found in any package files

Details
Learn More

Deployment Method: Individual Install, Upgrade, & Uninstall

To install UCSF Chimera, run the following command from the command line or from PowerShell:

>

To upgrade UCSF Chimera, run the following command from the command line or from PowerShell:

>

To uninstall UCSF Chimera, run the following command from the command line or from PowerShell:

>

Deployment Method:

NOTE

This applies to both open source and commercial editions of Chocolatey.

1. Enter Your Internal Repository Url

(this should look similar to https://community.chocolatey.org/api/v2/)


2. Setup Your Environment

1. Ensure you are set for organizational deployment

Please see the organizational deployment guide

2. Get the package into your environment

  • Open Source or Commercial:
    • Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
    • You can also just download the package and push it to a repository Download

3. Copy Your Script

choco upgrade chimera -y --source="'INTERNAL REPO URL'" --version="'1.14'" [other options]

See options you can pass to upgrade.

See best practices for scripting.

Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.

If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:


choco upgrade chimera -y --source="'INTERNAL REPO URL'" --version="'1.14'" 
$exitCode = $LASTEXITCODE

Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
  Exit 0
}

Exit $exitCode

- name: Install chimera
  win_chocolatey:
    name: chimera
    version: '1.14'
    source: INTERNAL REPO URL
    state: present

See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.


chocolatey_package 'chimera' do
  action    :install
  source   'INTERNAL REPO URL'
  version  '1.14'
end

See docs at https://docs.chef.io/resource_chocolatey_package.html.


cChocoPackageInstaller chimera
{
    Name     = "chimera"
    Version  = "1.14"
    Source   = "INTERNAL REPO URL"
}

Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.


package { 'chimera':
  ensure   => '1.14',
  provider => 'chocolatey',
  source   => 'INTERNAL REPO URL',
}

Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.


4. If applicable - Chocolatey configuration/installation

See infrastructure management matrix for Chocolatey configuration elements and examples.

NOTE

Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...

Package Approved

This package was approved by moderator flcdrg on 08 Dec 2019.

Description

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, nonprofit, and personal use. Chimera is developed by the Resource for Biocomputing, Visualization, and Informatics (RBVI), funded by the National Institutes of Health (NIGMS P41-GM103311).

Non-Commercial use ONLY

Use of the Chimera is restricted to non-commercial, personal, academic, non-profit, or government-sponsored research purposes. Commercial use of the Software requires a separately executed written license agreement.


tools\chocolateyinstall.ps1
$ErrorActionPreference = 'Stop'

$BaseURL = 'https://www.cgl.ucsf.edu'

# Discovering download link
# Process found here:  https://stackoverflow.com/questions/34422255/
# Unsure if all settings are needed.
$url = "$BaseURL/chimera/cgi-bin/secure/chimera-get.py"
$postData = "choice=Accept&file=win64/chimera-$env:ChocolateyPackageVersion-win64.exe"
$buffer = [text.encoding]::ascii.getbytes($postData)
[net.httpWebRequest] $req = [net.webRequest]::create($url)
$req.method = "POST"
$req.Accept = "text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8"
$req.Headers.Add("Accept-Language: en-US")
$req.Headers.Add("Accept-Encoding: gzip,deflate")
$req.Headers.Add("Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7")
$req.AllowAutoRedirect = $false
$req.ContentType = "application/x-www-form-urlencoded"
$req.ContentLength = $buffer.length
$req.TimeOut = 50000
$req.KeepAlive = $true
$req.Headers.Add("Keep-Alive: 300");
$reqst = $req.getRequestStream()
$reqst.write($buffer, 0, $buffer.length)
$reqst.flush()
$reqst.close()
[net.httpWebResponse] $res = $req.getResponse()
$resst = $res.getResponseStream()
$sr = new-object IO.StreamReader($resst)
$result = $sr.ReadToEnd()
$res.close()

$URLstub = ($result.split() |? {$_ -match 'href='}) -replace '.*href="(.*)".*','$1'

Write-Host 'You are establishing a license agreement as defined here:' -ForegroundColor Cyan
Write-Host 'http://www.cgl.ucsf.edu/chimera/license.html' -ForegroundColor Cyan

$packageArgs = @{
   packageName   = $env:ChocolateyPackageName
   fileType      = 'EXE'
   url64bit      = $BaseURL + $URLstub
   softwareName  = 'UCSF Chimera*' 
   checksum64    = '7607b11115ba8cbaa87e9f0c8362334b753b531e66dc1341a49dd24802934f80'
   checksumType64= 'sha256'
   silentArgs   = '/VERYSILENT /SUPPRESSMSGBOXES /NORESTART /SP-'
   validExitCodes= @(0)
}

Install-ChocolateyPackage @packageArgs

Log in or click on link to see number of positives.

In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).

Chocolatey Pro provides runtime protection from possible malware.

Add to Builder Version Downloads Last Updated Status
UCSF Chimera 1.15.0.20210211 763 Thursday, February 11, 2021 Approved
UCSF Chimera 1.15 157 Sunday, January 3, 2021 Approved
UCSF Chimera 1.14 947 Friday, December 6, 2019 Approved
UCSF Chimera 1.13.1 658 Friday, November 30, 2018 Approved
UCSF Chimera 1.13 248 Friday, August 3, 2018 Approved
UCSF Chimera 1.12 357 Thursday, February 22, 2018 Approved

This package has no dependencies.

Discussion for the UCSF Chimera Package

Ground Rules:

  • This discussion is only about UCSF Chimera and the UCSF Chimera package. If you have feedback for Chocolatey, please contact the Google Group.
  • This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
  • The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
  • Tell us what you love about the package or UCSF Chimera, or tell us what needs improvement.
  • Share your experiences with the package, or extra configuration or gotchas that you've found.
  • If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.
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