Downloads:
4,567
Downloads of v 1.12:
429
Last Update:
22 Feb 2018
Package Maintainer(s):
Software Author(s):
- UCSF Resource for Biocomputing
- Visualization
- and Informatics
Tags:
chimera chemistry molecular modeling python nonsilent adminUCSF Chimera
This is not the latest version of UCSF Chimera available.
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1.12 | Updated: 22 Feb 2018
Downloads:
4,567
Downloads of v 1.12:
429
Maintainer(s):
Software Author(s):
- UCSF Resource for Biocomputing
- Visualization
- and Informatics
UCSF Chimera 1.12
This is not the latest version of UCSF Chimera available.
Legal Disclaimer: Neither this package nor Chocolatey Software, Inc. are affiliated with or endorsed by UCSF Resource for Biocomputing, Visualization, and Informatics. The inclusion of UCSF Resource for Biocomputing, Visualization, and Informatics trademark(s), if any, upon this webpage is solely to identify UCSF Resource for Biocomputing, Visualization, and Informatics goods or services and not for commercial purposes.
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All Checks are Passing
3 Passing Tests
Deployment Method: Individual Install, Upgrade, & Uninstall
To install UCSF Chimera, run the following command from the command line or from PowerShell:
To upgrade UCSF Chimera, run the following command from the command line or from PowerShell:
To uninstall UCSF Chimera, run the following command from the command line or from PowerShell:
Deployment Method:
This applies to both open source and commercial editions of Chocolatey.
1. Enter Your Internal Repository Url
(this should look similar to https://community.chocolatey.org/api/v2/)
2. Setup Your Environment
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment
Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
-
Download the package:
Download - Follow manual internalization instructions
-
-
Package Internalizer (C4B)
-
Run: (additional options)
choco download chimera --internalize --version=1.12 --source=https://community.chocolatey.org/api/v2/
-
For package and dependencies run:
choco push --source="'INTERNAL REPO URL'"
- Automate package internalization
-
Run: (additional options)
3. Copy Your Script
choco upgrade chimera -y --source="'INTERNAL REPO URL'" --version="'1.12'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade chimera -y --source="'INTERNAL REPO URL'" --version="'1.12'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Install chimera
win_chocolatey:
name: chimera
version: '1.12'
source: INTERNAL REPO URL
state: present
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
chocolatey_package 'chimera' do
action :install
source 'INTERNAL REPO URL'
version '1.12'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
cChocoPackageInstaller chimera
{
Name = "chimera"
Version = "1.12"
Source = "INTERNAL REPO URL"
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'chimera':
ensure => '1.12',
provider => 'chocolatey',
source => 'INTERNAL REPO URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
4. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
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This package was approved by moderator gep13 on 27 Feb 2018.
UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated. Chimera includes complete documentation and several tutorials, and can be downloaded free of charge for academic, government, nonprofit, and personal use. Chimera is developed by the Resource for Biocomputing, Visualization, and Informatics (RBVI), funded by the National Institutes of Health (NIGMS P41-GM103311).
Non-Commercial use ONLY
Use of the Chimera is restricted to non-commercial, personal, academic, non-profit, or government-sponsored research purposes. Commercial use of the Software requires a separately executed written license agreement.
From: http://www.cgl.ucsf.edu/chimera/license.html
LICENSE
UCSF Chimera Non-Commercial Software License Agreement
This license agreement ("License"), effective today, is made by and
between you ("Licensee") and The Regents of the University of California,
a California corporation having its statewide administrative offices at
1111 Franklin Street, Oakland, California 94607-5200 ("The Regents"),
acting through its Office of Innovation, Technology & Alliances,
University of California San Francisco ("UCSF"), 3333 California Street,
Suite S-11, San Francisco, California 94143, and concerns certain software
known as "UCSF Chimera," a system of software programs for the
visualization and interactive manipulation of molecular models, developed
by the Computer Graphics Laboratory at UCSF for research purposes and
includes executable code, source code, and documentation ("Software").
1. General.
A non-exclusive, nontransferable, perpetual license is granted to the
Licensee to install and use the Software for academic, non-profit, or
government-sponsored research purposes. Use of the Software under this
License is restricted to non-commercial purposes. Commercial use of
the Software requires a separately executed written license agreement.
2. Permitted Use and Restrictions.
Licensee agrees that it will use the Software, and any modifications,
improvements, or derivatives to the Software that the Licensee may
create (collectively, "Improvements") solely for internal, non-
commercial purposes and shall not distribute or transfer the Software
or Improvements to any person or third parties without prior written
permission from The Regents. The term "non-commercial," as used in
this License, means academic or other scholarly research which (a) is
not undertaken for profit, or (b) is not intended to produce works,
services, or data for commercial use, or (c) is neither conducted, nor
funded, by a person or an entity engaged in the commercial use,
application or exploitation of works similar to the Software.
3. Ownership and Assignment of Copyright.
The Licensee acknowledges that The Regents hold copyright in the
Software and associated documentation, and the Software and associated
documentation are the property of The Regents. The Licensee agrees
that any Improvements made by Licensee shall be subject to the same
terms and conditions as the Software. Licensee agrees not to assert a
claim of infringement in Licensee copyrights in Improvements in the
event The Regents prepares substantially similar modifications or
derivative works. The Licensee agrees to use his/her reasonable best
efforts to protect the contents of the Software and to prevent
unauthorized disclosure by its agents, officers, employees, and
consultants. If the Licensee receives a request to furnish all or any
portion of the Software to a third party, Licensee will not fulfill
such a request but will refer the third party to the UCSF Chimera web
page so that the third party's use of this Software will be subject
to the terms and conditions of this License. Notwithstanding the
above, Licensee may disclose any Improvements that do not involve
disclosure of the Software.
4. Copies.
The Licensee may make a reasonable number of copies of the Software
for the purposes of backup, maintenance of the Software or the
development of derivative works based on the Software. These
additional copies shall carry the copyright notice and shall be
controlled by this License, and will be destroyed along with the
original by the Licensee upon termination of the License.
5. Acknowledgement.
Licensee agrees that any publication of results obtained with the
Software will acknowledge its use by an appropriate citation as
specified in the documentation.
6. Disclaimer of Warranties and Limitation of Liability.
THE LICENSEE AGREES THAT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. THE REGENTS MAKES NO
REPRESENTATION OR WARRANTY THAT THE SOFTWARE WILL NOT INFRINGE ANY
PATENT OR OTHER PROPRIETARY RIGHT. IN NO EVENT SHALL THE REGENTS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
7. Termination.
This License is effective until terminated by either party. Licensee's
rights under this License will terminate automatically without notice
from The Regents if Licensee fails to comply with any term(s) of this
License. Licensee may terminate the License by giving written notice
of termination to The Regents. Upon termination of this License,
Licensee shall immediately discontinue all use of the Software and
destroy the original and all copies, full or partial, of the Software,
including any modifications or derivative works, and associated
documentation.
8. Governing Law and General Provisions.
This License shall be governed by the laws of the State of California,
excluding the application of its conflicts of law rules. This License
shall not be governed by the United Nations Convention on Contracts
for the International Sale of Goods, the application of which is
expressly excluded. If any provisions of this License are held invalid
or unenforceable for any reason, the remaining provisions shall remain
in full force and effect. This License is binding upon any heirs and
assigns of the Licensee. The License granted to Licensee hereunder may
not be assigned or transferred to any other person or entity without
the express consent of The Regents. This License constitutes the
entire agreement between the parties with respect to the use of the
Software licensed hereunder and supersedes all other previous or
contemporaneous agreements or understandings between the parties,
whether verbal or written, concerning the subject matter. Any
translation of this License is done for local requirements and in the
event of a dispute between the English and any non-English versions,
the English version of this License shall govern.
Revised 28jan04
Log in or click on link to see number of positives.
- chimera.1.12.nupkg (2c71446b415e) - ## / 61
- chimera-1.12-win64.exe (e0d294db3dd9) - ## / 63
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Add to Builder | Version | Downloads | Last Updated | Status |
---|---|---|---|---|
UCSF Chimera 1.18.0 | 289 | Monday, August 5, 2024 | Approved | |
UCSF Chimera 1.17.3 | 240 | Tuesday, August 8, 2023 | Approved | |
UCSF Chimera 1.17.1 | 170 | Sunday, April 30, 2023 | Approved | |
UCSF Chimera 1.17 | 83 | Monday, April 17, 2023 | Approved | |
UCSF Chimera 1.16 | 251 | Wednesday, December 29, 2021 | Approved | |
UCSF Chimera 1.15.0.20210211 | 817 | Thursday, February 11, 2021 | Approved | |
UCSF Chimera 1.15 | 211 | Sunday, January 3, 2021 | Approved | |
UCSF Chimera 1.14 | 1021 | Friday, December 6, 2019 | Approved | |
UCSF Chimera 1.13.1 | 741 | Friday, November 30, 2018 | Approved | |
UCSF Chimera 1.13 | 315 | Friday, August 3, 2018 | Approved | |
UCSF Chimera 1.12 | 429 | Thursday, February 22, 2018 | Approved |
© The Regents of the University of California, 1999-2017
This package has no dependencies.
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- This discussion is only about UCSF Chimera and the UCSF Chimera package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
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- Tell us what you love about the package or UCSF Chimera, or tell us what needs improvement.
- Share your experiences with the package, or extra configuration or gotchas that you've found.
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