Downloads:
102,235
Downloads of v 14.6.1.20160811:
1,042
Last Update:
18 Aug 2016
Package Maintainer(s):
Software Author(s):
- The Jmol Development Team
Tags:
jmol chemistry molecule image viewer javaJmol molecule viewer
This is not the latest version of Jmol molecule viewer available.
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14.6.1.20160811 | Updated: 18 Aug 2016
Downloads:
102,235
Downloads of v 14.6.1.20160811:
1,042
Maintainer(s):
Software Author(s):
- The Jmol Development Team
Jmol molecule viewer 14.6.1.20160811
This is not the latest version of Jmol molecule viewer available.
Legal Disclaimer: Neither this package nor Chocolatey Software, Inc. are affiliated with or endorsed by The Jmol Development Team. The inclusion of The Jmol Development Team trademark(s), if any, upon this webpage is solely to identify The Jmol Development Team goods or services and not for commercial purposes.
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Some Checks Have Failed or Are Not Yet Complete
Not All Tests Have Passed
Validation Testing Passed
Verification Testing Passed
DetailsScan Testing Resulted in Flagged:
This package was submitted (and approved) prior to automated virus scanning integration into the package moderation processs.
We recommend clicking the "Details" link to make your own decision on installing this package.
Deployment Method: Individual Install, Upgrade, & Uninstall
To install Jmol molecule viewer, run the following command from the command line or from PowerShell:
To upgrade Jmol molecule viewer, run the following command from the command line or from PowerShell:
To uninstall Jmol molecule viewer, run the following command from the command line or from PowerShell:
Deployment Method:
This applies to both open source and commercial editions of Chocolatey.
1. Enter Your Internal Repository Url
(this should look similar to https://community.chocolatey.org/api/v2/)
2. Setup Your Environment
1. Ensure you are set for organizational deployment
Please see the organizational deployment guide
2. Get the package into your environment
Option 1: Cached Package (Unreliable, Requires Internet - Same As Community)-
Open Source or Commercial:
- Proxy Repository - Create a proxy nuget repository on Nexus, Artifactory Pro, or a proxy Chocolatey repository on ProGet. Point your upstream to https://community.chocolatey.org/api/v2/. Packages cache on first access automatically. Make sure your choco clients are using your proxy repository as a source and NOT the default community repository. See source command for more information.
- You can also just download the package and push it to a repository Download
-
Open Source
-
Download the package:
Download - Follow manual internalization instructions
-
-
Package Internalizer (C4B)
-
Run: (additional options)
choco download jmol --internalize --version=14.6.1.20160811 --source=https://community.chocolatey.org/api/v2/
-
For package and dependencies run:
choco push --source="'INTERNAL REPO URL'"
- Automate package internalization
-
Run: (additional options)
3. Copy Your Script
choco upgrade jmol -y --source="'INTERNAL REPO URL'" --version="'14.6.1.20160811'" [other options]
See options you can pass to upgrade.
See best practices for scripting.
Add this to a PowerShell script or use a Batch script with tools and in places where you are calling directly to Chocolatey. If you are integrating, keep in mind enhanced exit codes.
If you do use a PowerShell script, use the following to ensure bad exit codes are shown as failures:
choco upgrade jmol -y --source="'INTERNAL REPO URL'" --version="'14.6.1.20160811'"
$exitCode = $LASTEXITCODE
Write-Verbose "Exit code was $exitCode"
$validExitCodes = @(0, 1605, 1614, 1641, 3010)
if ($validExitCodes -contains $exitCode) {
Exit 0
}
Exit $exitCode
- name: Install jmol
win_chocolatey:
name: jmol
version: '14.6.1.20160811'
source: INTERNAL REPO URL
state: present
See docs at https://docs.ansible.com/ansible/latest/modules/win_chocolatey_module.html.
chocolatey_package 'jmol' do
action :install
source 'INTERNAL REPO URL'
version '14.6.1.20160811'
end
See docs at https://docs.chef.io/resource_chocolatey_package.html.
cChocoPackageInstaller jmol
{
Name = "jmol"
Version = "14.6.1.20160811"
Source = "INTERNAL REPO URL"
}
Requires cChoco DSC Resource. See docs at https://github.com/chocolatey/cChoco.
package { 'jmol':
ensure => '14.6.1.20160811',
provider => 'chocolatey',
source => 'INTERNAL REPO URL',
}
Requires Puppet Chocolatey Provider module. See docs at https://forge.puppet.com/puppetlabs/chocolatey.
4. If applicable - Chocolatey configuration/installation
See infrastructure management matrix for Chocolatey configuration elements and examples.
Private CDN cached downloads available for licensed customers. Never experience 404 breakages again! Learn more...
This package was approved by moderator jberezanski on 24 Aug 2016.
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry.
Features
- Free, open-source software licensed under the GNU Lesser General Public License
- Applet, Application, and Systems Integration Component*
- Multi-language
- Cross-platform
- Supports all major web browsers: Internet Explorer, Mozilla and Firefox, Safari, Google Chrome, Opera, Konqueror, IceWeasel, ...
- High-performance 3D rendering with no hardware requirements
- File formats (see also the file formats section within Jmol Wiki):
- MOL MDL / Elsevier / Symyx structure (classic version V2000)
- V3000 MDL / Elsevier / Symyx structure (new version V3000)
- SDF MDL / Elsevier / Symyx structure (multiple models)
- CTFile MDL / Elsevier / Symyx chemical table (generic)
- CIF Crystallographic Information File - standard from the International Union of Crystallography
- mmCIF Macromolecular Crystallographic Information File - standard from the International Union of Crystallography
- CML Chemical Markup Language
- PDB Protein Data Bank - Research Collaboratory for Structural Bioinformatics
- XYZ XYZ format, XMol file - Minnesota Supercomputer Institute
- XYZ+vib XYZ format with added vibrational vector information
- XYZ-FAH XYZ format for Folding@home
- MOL2 Sybyl, Tripos
- Alchemy Tripos
- CSF Fujitsu CAChe chemical structure, now Fujitsu Sygress
- GAMESS General Atomic and Molecular Electronic Structure System output (both US and UK variants) - Gordon Research Group, Iowa State University
- Gaussian Gaussian 94/98/03 output - Gaussian, Inc.
- Cube Gaussian, Inc.
- Ghemical The Ghemical computational chemistry package
- MM1GP Ghemical molecular mechanics file
- HIN HIN / HIV files from HyperChem - Hypercube, Inc.
- Jaguar Schrodinger, LLC
- MOLPRO Molpro output
- MOPAC MOPAC 93/97/2002 output (public domain)
- MGF MOPAC 2007 (v.7.101) graphf output (public domain)
- NWCHEM NWChem output - Pacific Northwest National Laboratory
- odydata Odyssey data - WaveFunction, Inc.
- xodydata Odyssey XML data - WaveFunction, Inc.
- QOUT Q-Chem, Inc.
- SHELX Structural Chemistry Department, University of Göttingen (Germany)
- SMOL Spartan data - Wavefunction, Inc.
- spinput Spartan data - Wavefunction, Inc.
- GRO Gromos87 format from GROMACS
- PQR Modified pdb format including charge and radius
- Amber The Amber package of molecular simulation programs
- JME Java Molecular Editor - Peter Ertl
- CASTEP The CASTEP software package, uses density functional theory
- FHI-aims Full-potential / all-electron electronic structure theory with local orbitals - Fritz-Haber-Institut der Max-Planck-Gesellschaft
- VASP VASP / VAMP / Vienna ab-initio simulation package
- DGrid Miroslav Kohout, Max-Planck Institute
- ADF ADF output - Amsterdam Density Functional
- XSD Accelrys Materials Studio
- AGL ArgusLab
- DFT Wien2k
- AMPAC AMPAC output - Semichem, Inc.
- WebMO WebMO interface to computational chemistry packages
- Molden Electron density / molecular orbitals
- PSI3 Output files from the PSI3 suite of quantum chemical programs
- CRYSTAL Output files from CRYSTAL, a computational tool for solid state chemistry and physics. Theoretical Chemistry Group, Univ. Torino, Italy.
- Files which are compressed with gzip will automatically be decompressed
- Animations
- Vibrations
- Surfaces
- Orbitals
- Support for unit cell and symmetry operations
- Schematic shapes for secondary structures in biomolecules
- Measurements of distance, angle, torsion angle
- Support for RasMol/Chime scripting language
- JavaScript support library (Jmol.js)
- Exports to jpg, png, gif, ppm, pdf, POV-Ray, Gaussian, Maya, vrml, x3d, idtf, web page.
$desktop = $([Environment]::GetFolderPath([Environment+SpecialFolder]::DesktopDirectory))
$shortcut = Join-Path $desktop 'jmol.lnk'
if ([System.IO.File]::Exists($shortcut)) {
Write-Debug "Found the desktop shortcut. Deleting it..."
[System.IO.File]::Delete($shortcut)
}
Log in or click on link to see number of positives.
- Jmol Launcher.exe (00b274142ca3) - ## / 56
- jsmol.zip (7840f31e50a5) - ## / 54
- Jmol-14.6.1_2016.08.11-binary.zip (60e8fb9de8b4) - ## / 42
- jmol.14.6.1.20160811.nupkg (4cccba360299) - ## / 56
In cases where actual malware is found, the packages are subject to removal. Software sometimes has false positives. Moderators do not necessarily validate the safety of the underlying software, only that a package retrieves software from the official distribution point and/or validate embedded software against official distribution point (where distribution rights allow redistribution).
Chocolatey Pro provides runtime protection from possible malware.
Add to Builder | Version | Downloads | Last Updated | Status |
---|---|---|---|---|
Jmol molecule viewer 16.3.5 | 54 | Thursday, November 14, 2024 | Approved | |
Jmol molecule viewer 16.3.1 | 166 | Thursday, October 24, 2024 | Approved | |
Jmol molecule viewer 16.2.37 | 69 | Tuesday, October 15, 2024 | Approved | |
Jmol molecule viewer 16.2.31 | 115 | Monday, September 23, 2024 | Approved | |
Jmol molecule viewer 16.2.25 | 625 | Monday, August 19, 2024 | Approved | |
Jmol molecule viewer 16.2.21 | 50 | Monday, August 5, 2024 | Approved | |
Jmol molecule viewer 16.2.17 | 95 | Friday, June 21, 2024 | Approved | |
Jmol molecule viewer 16.2.15 | 89 | Wednesday, May 8, 2024 | Approved | |
Jmol molecule viewer 16.2.5 | 69 | Tuesday, April 23, 2024 | Approved | |
Jmol molecule viewer 16.2.1 | 90 | Wednesday, April 10, 2024 | Approved | |
Jmol molecule viewer 16.1.63 | 506 | Wednesday, March 13, 2024 | Approved | |
Jmol molecule viewer 16.1.57 | 104 | Thursday, February 22, 2024 | Approved | |
Jmol molecule viewer 16.1.49 | 132 | Friday, January 26, 2024 | Approved | |
Jmol molecule viewer 16.1.47 | 147 | Monday, December 18, 2023 | Approved | |
Jmol molecule viewer 16.1.45 | 144 | Monday, November 13, 2023 | Approved | |
Jmol molecule viewer 16.1.43 | 141 | Saturday, October 28, 2023 | Approved | |
Jmol molecule viewer 16.1.41 | 750 | Tuesday, September 26, 2023 | Approved | |
Jmol molecule viewer 16.1.35 | 421 | Friday, August 25, 2023 | Approved | |
Jmol molecule viewer 16.1.31 | 487 | Saturday, August 5, 2023 | Approved | |
Jmol molecule viewer 16.1.13 | 376 | Friday, June 16, 2023 | Approved | |
Jmol molecule viewer 16.1.11 | 392 | Sunday, April 30, 2023 | Approved | |
Jmol molecule viewer 16.1.9 | 187 | Monday, April 3, 2023 | Approved | |
Jmol molecule viewer 16.1.5 | 196 | Saturday, February 18, 2023 | Approved | |
Jmol molecule viewer 14.32.83 | 195 | Sunday, January 8, 2023 | Approved | |
Jmol molecule viewer 14.32.82 | 565 | Friday, December 23, 2022 | Approved | |
Jmol molecule viewer 14.32.81 | 377 | Saturday, December 3, 2022 | Approved | |
Jmol molecule viewer 14.32.80 | 154 | Saturday, November 5, 2022 | Approved | |
Jmol molecule viewer 14.32.77 | 175 | Saturday, October 15, 2022 | Approved | |
Jmol molecule viewer 14.32.75 | 308 | Monday, September 26, 2022 | Approved | |
Jmol molecule viewer 14.32.73 | 758 | Tuesday, August 30, 2022 | Approved | |
Jmol molecule viewer 14.32.68 | 172 | Saturday, August 6, 2022 | Approved | |
Jmol molecule viewer 14.32.63 | 153 | Saturday, July 23, 2022 | Approved | |
Jmol molecule viewer 14.32.62 | 165 | Friday, July 8, 2022 | Approved | |
Jmol molecule viewer 14.32.60 | 216 | Friday, June 24, 2022 | Approved | |
Jmol molecule viewer 14.32.58 | 260 | Saturday, May 28, 2022 | Approved | |
Jmol molecule viewer 14.32.55 | 185 | Saturday, May 14, 2022 | Approved | |
Jmol molecule viewer 14.32.54 | 193 | Monday, May 2, 2022 | Approved | |
Jmol molecule viewer 14.32.50 | 199 | Tuesday, April 19, 2022 | Approved | |
Jmol molecule viewer 14.32.42 | 217 | Saturday, March 26, 2022 | Approved | |
Jmol molecule viewer 14.32.33 | 207 | Saturday, March 12, 2022 | Approved | |
Jmol molecule viewer 14.32.26 | 187 | Saturday, February 26, 2022 | Approved | |
Jmol molecule viewer 14.32.21 | 196 | Tuesday, February 15, 2022 | Approved | |
Jmol molecule viewer 14.32.17 | 187 | Wednesday, February 2, 2022 | Approved | |
Jmol molecule viewer 14.32.10 | 191 | Monday, January 10, 2022 | Approved | |
Jmol molecule viewer 14.32.6 | 204 | Wednesday, December 29, 2021 | Approved | |
Jmol molecule viewer 14.31.61 | 223 | Saturday, November 27, 2021 | Approved | |
Jmol molecule viewer 14.31.60 | 207 | Saturday, November 6, 2021 | Approved | |
Jmol molecule viewer 14.31.57 | 226 | Monday, October 18, 2021 | Approved | |
Jmol molecule viewer 14.31.53 | 250 | Wednesday, September 8, 2021 | Approved | |
Jmol molecule viewer 14.31.52 | 198 | Friday, August 20, 2021 | Approved | |
Jmol molecule viewer 14.31.49 | 237 | Saturday, August 7, 2021 | Approved | |
Jmol molecule viewer 14.31.48 | 132 | Sunday, August 1, 2021 | Approved | |
Jmol molecule viewer 14.31.44 | 290 | Monday, July 12, 2021 | Approved | |
Jmol molecule viewer 14.31.41 | 266 | Monday, May 31, 2021 | Approved | |
Jmol molecule viewer 14.31.38 | 250 | Saturday, May 15, 2021 | Approved | |
Jmol molecule viewer 14.31.36 | 263 | Sunday, April 18, 2021 | Approved | |
Jmol molecule viewer 14.31.35 | 276 | Monday, March 22, 2021 | Approved | |
Jmol molecule viewer 14.31.32 | 335 | Sunday, February 14, 2021 | Approved | |
Jmol molecule viewer 14.31.28 | 231 | Saturday, January 30, 2021 | Approved | |
Jmol molecule viewer 14.31.23 | 267 | Tuesday, January 12, 2021 | Approved | |
Jmol molecule viewer 14.31.20 | 253 | Sunday, December 27, 2020 | Approved | |
Jmol molecule viewer 14.31.18 | 270 | Friday, November 27, 2020 | Approved | |
Jmol molecule viewer 14.31.17 | 305 | Saturday, November 14, 2020 | Approved | |
Jmol molecule viewer 14.31.10 | 286 | Sunday, October 25, 2020 | Approved | |
Jmol molecule viewer 14.31.9 | 301 | Sunday, October 11, 2020 | Approved | |
Jmol molecule viewer 14.31.8 | 322 | Monday, September 28, 2020 | Approved | |
Jmol molecule viewer 14.31.4 | 346 | Saturday, September 12, 2020 | Approved | |
Jmol molecule viewer 14.31.3 | 316 | Sunday, August 30, 2020 | Approved | |
Jmol molecule viewer 14.31.2 | 355 | Sunday, July 19, 2020 | Approved | |
Jmol molecule viewer 14.31.0 | 353 | Wednesday, June 10, 2020 | Approved | |
Jmol molecule viewer 14.30.2 | 555 | Saturday, February 8, 2020 | Approved | |
Jmol molecule viewer 14.30.1 | 448 | Friday, December 20, 2019 | Approved | |
Jmol molecule viewer 14.29.54 | 578 | Saturday, October 12, 2019 | Approved | |
Jmol molecule viewer 14.29.53 | 435 | Saturday, September 28, 2019 | Approved | |
Jmol molecule viewer 14.29.52 | 1674 | Thursday, August 29, 2019 | Approved | |
Jmol molecule viewer 14.29.47 | 1988 | Wednesday, July 31, 2019 | Approved | |
Jmol molecule viewer 14.29.46 | 974 | Tuesday, June 18, 2019 | Approved | |
Jmol molecule viewer 14.29.42 | 7029 | Thursday, May 16, 2019 | Approved | |
Jmol molecule viewer 14.29.40 | 3605 | Tuesday, April 30, 2019 | Approved | |
Jmol molecule viewer 14.29.36 | 3881 | Sunday, April 14, 2019 | Approved | |
Jmol molecule viewer 14.29.34 | 944 | Thursday, April 11, 2019 | Approved | |
Jmol molecule viewer 14.29.31 | 8878 | Tuesday, March 5, 2019 | Approved | |
Jmol molecule viewer 14.29.29 | 5988 | Friday, November 30, 2018 | Approved | |
Jmol molecule viewer 14.29.28 | 497 | Thursday, November 1, 2018 | Approved | |
Jmol molecule viewer 14.29.26 | 414 | Friday, October 12, 2018 | Approved | |
Jmol molecule viewer 14.29.22 | 843 | Monday, September 17, 2018 | Approved | |
Jmol molecule viewer 14.29.17 | 9431 | Friday, June 22, 2018 | Approved | |
Jmol molecule viewer 14.29.16 | 470 | Friday, June 15, 2018 | Approved | |
Jmol molecule viewer 14.29.15 | 1707 | Monday, May 28, 2018 | Approved | |
Jmol molecule viewer 14.29.14 | 464 | Friday, May 18, 2018 | Approved | |
Jmol molecule viewer 14.29.13 | 4251 | Tuesday, April 24, 2018 | Approved | |
Jmol molecule viewer 14.29.12 | 3651 | Thursday, April 5, 2018 | Approved | |
Jmol molecule viewer 14.29.5 | 7190 | Monday, February 12, 2018 | Approved | |
Jmol molecule viewer 14.28.3 | 572 | Thursday, January 25, 2018 | Approved | |
Jmol molecule viewer 14.28.2 | 456 | Wednesday, January 17, 2018 | Approved | |
Jmol molecule viewer 14.27.2 | 612 | Friday, December 22, 2017 | Approved | |
Jmol molecule viewer 14.25.2 | 808 | Friday, December 1, 2017 | Approved | |
Jmol molecule viewer 14.21.1 | 586 | Tuesday, October 24, 2017 | Approved | |
Jmol molecule viewer 14.20.8 | 528 | Thursday, October 19, 2017 | Approved | |
Jmol molecule viewer 14.20.7 | 469 | Thursday, October 5, 2017 | Approved | |
Jmol molecule viewer 14.20.6 | 467 | Tuesday, September 19, 2017 | Approved | |
Jmol molecule viewer 14.20.5 | 935 | Friday, September 1, 2017 | Approved | |
Jmol molecule viewer 14.20.3 | 2507 | Tuesday, August 1, 2017 | Approved | |
Jmol molecule viewer 14.18.1 | 2469 | Monday, June 12, 2017 | Approved | |
Jmol molecule viewer 14.17.1 | 923 | Friday, June 2, 2017 | Approved | |
Jmol molecule viewer 14.15.2 | 2671 | Wednesday, May 3, 2017 | Approved | |
Jmol molecule viewer 14.9.1 | 2095 | Wednesday, March 8, 2017 | Approved | |
Jmol molecule viewer 14.8.0 | 1055 | Tuesday, January 31, 2017 | Approved | |
Jmol molecule viewer 14.6.1.20160811 | 1042 | Thursday, August 18, 2016 | Approved | |
Jmol 14.4.4 | 469 | Friday, April 22, 2016 | Approved |
Copyright © 1998-2016 The Jmol Development Team
-
- jre8 (≥ 8.0)
Ground Rules:
- This discussion is only about Jmol molecule viewer and the Jmol molecule viewer package. If you have feedback for Chocolatey, please contact the Google Group.
- This discussion will carry over multiple versions. If you have a comment about a particular version, please note that in your comments.
- The maintainers of this Chocolatey Package will be notified about new comments that are posted to this Disqus thread, however, it is NOT a guarantee that you will get a response. If you do not hear back from the maintainers after posting a message below, please follow up by using the link on the left side of this page or follow this link to contact maintainers. If you still hear nothing back, please follow the package triage process.
- Tell us what you love about the package or Jmol molecule viewer, or tell us what needs improvement.
- Share your experiences with the package, or extra configuration or gotchas that you've found.
- If you use a url, the comment will be flagged for moderation until you've been whitelisted. Disqus moderated comments are approved on a weekly schedule if not sooner. It could take between 1-5 days for your comment to show up.